CDS

Accession Number TCMCG057C12665
gbkey CDS
Protein Id XP_018474529.1
Location join(19238513..19238681,19238768..19238838,19238927..19238990,19239219..19239266,19239335..19239382,19239457..19239575,19239780..19239846,19239937..19240028,19240105..19240242,19240336..19240440,19240534..19240617,19240717..19240860)
Gene LOC108845837
GeneID 108845837
Organism Raphanus sativus

Protein

Length 382aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018619027.1
Definition PREDICTED: endonuclease III homolog 1, chloroplastic isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATTCTCGTTAACAGAGCCGTTTCTACAGCAAGCCTTGACAACGTCGCTTGGTTTTCTCGAATCCGAACCATGAATCGCAAAATTCACTCAACTGTCTCATCTTCTTCTTCTAAACCCAACTCCGTGAGAATCCAACGTCCTCGCTCCGAAGTAGATTCAAACCCAGGACCAGCCAATGGAGCTTCGGAGACTTTAGTATACACCCGGAAGAAAAAGCTAAAGCAGGAGAAAGATTCCCTACGTGGATTGCCTGATATAGAAGACTTTGCTTTCAAAAAGAATACTAGTAGATCATCTTCCAAGAGATCAACGGAAACTAACATCACTGTGGCTTCAACCAAAACAGCAGGGAGGCCAACTGAAACTAACATCACTGTGACTTCAGCCAAAACAGCAGGAAACTCGCCTGAAAACTGGGTACAAGTGCTCGAGGGCATTCGTCAAATGAGATCATCTGGAGATGCACCAGTTGATTCTATGGGTTGTGATAAAGCTGGTAGCTTCCTACCTCCTACGGAAAGAAGATTTGTTGTCTTGTTGGGATCACTTCTTTCAAGTCAAACAAAAGATCAAGTCAACAATGCTGCAATACATCGTCTTCATCAAAACGGCCTTCTCACTCCCGAAGCCATTGATAAGGCTGATGAATCAACCATTAAAGAACTGATTTATCCGGTTGGATTTTATACAAGGAAGGCTACATATATGAAGAAGATAGCTAAAATCTGTCTAGAGAGATACAACGGAGACATTCCAAGCTCTTTGGACGACCTACTTGCGCTTCCGGGGATTGGTCCCAAGATGGCACATTTGATTCTGCATATAGCATGGAATGATGTTCAAGGTATCTGTGTAGATACACATGTCCATCGCATTTGCAATCGACTTGGTTGGGTTTCTCGACCAGGAACCAAACAGAAAACTTCGACTCCAGAGGAAACAAGAGTAGCTCTGCAGCAATGGCTTCCAAAGGAAGAATGGGTTGCCATTAACCCGCTTCTGGTGGGATTTGGACAAACGGTTTGCACGCCGCTGAGACCTCGTTGCGAAGCCTGCAGTGTTGCTAAGCTTTGTCCTGCTGCTTTCAAAGAGGCTTCAAGTCCATCATCCAAGTTGAAGAAATCTAAGCGAAGCAAAGAACTATAA
Protein:  
MILVNRAVSTASLDNVAWFSRIRTMNRKIHSTVSSSSSKPNSVRIQRPRSEVDSNPGPANGASETLVYTRKKKLKQEKDSLRGLPDIEDFAFKKNTSRSSSKRSTETNITVASTKTAGRPTETNITVTSAKTAGNSPENWVQVLEGIRQMRSSGDAPVDSMGCDKAGSFLPPTERRFVVLLGSLLSSQTKDQVNNAAIHRLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATYMKKIAKICLERYNGDIPSSLDDLLALPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNRLGWVSRPGTKQKTSTPEETRVALQQWLPKEEWVAINPLLVGFGQTVCTPLRPRCEACSVAKLCPAAFKEASSPSSKLKKSKRSKEL